Alkaloid RC

Common Name

Alkaloid RC Description

Alkaloid RC is an alkaloid RC is an alkaloid from Papaver rhoeas (corn poppy)
Alkaloid RC belongs to the family of glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (Inferred from compound structure)
Structure

MOLSDFPDBSMILESInChI

Structure for HMDB29361 (Alkaloid RC)

Synonyms

Not Available Chemical Formlia

C26H29NO11 Average Molecliar Weight

531.5086 Monoisotopic Molecliar Weight

531.174060775 IUPAC Name

2-(hydroxymethyl)-6-({13-methyl-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.0²,¹⁰.0⁴,⁸.0¹⁵,²³.0¹⁸,²²]pentacosa-2,4(8),9,15(23),16,18(22)-hexaen-24-yl}oxy)oxane-3,4,5-triol Traditional Name

2-(hydroxymethyl)-6-({13-methyl-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.0²,¹⁰.0⁴,⁸.0¹⁵,²³.0¹⁸,²²]pentacosa-2,4(8),9,15(23),16,18(22)-hexaen-24-yl}oxy)oxane-3,4,5-triol CAS Registry Number

17948-36-6 SMILES

CN1CCC2=CC3=C(OCO3)C=C2C2OC(OC3OC(CO)C(O)C(O)C3O)C3=C(C=CC4=C3OCO4)C12

InChI Identifier

InChI=1S/C26H29NO11/c1-27-5-4-11-6-15-16(34-9-33-15)7-13(11)23-19(27)12-2-3-14-24(35-10-32-14)18(12)25(37-23)38-26-22(31)21(30)20(29)17(8-28)36-26/h2-3,6-7,17,19-23,25-26,28-31H,4-5,8-10H2,1H3

InChI Key

LOJGKLLTOGPATF-UHFFFAOYSA-N Chemical Taxonomy Description

This compound belongs to the class of chemical entities known as rhoeadine alkaloids. These are alkaloids with a structure based on rhoeadine. They usually contain a benzazepine system fused with a six-membered hemiacetal or acetal. Kingdom

Chemical entities Super Class

Organic compounds Class

Alkaloids and derivatives Sub Class

Rhoeadine alkaloids Direct Parent

Rhoeadine alkaloids Alternative Parents

  • Hexoses
  • Benzazepines
  • O-glycosyl compounds
  • 2-benzopyrans
  • Benzodioxoles
  • Aralkylamines
  • Azepines
  • Benzenoids
  • Oxanes
  • Trialkylamines
  • Secondary alcohols
  • Oxacyclic compounds
  • Acetals
  • Polyols
  • Azacyclic compounds
  • Primary alcohols
  • Hydrocarbon derivatives
  • Organopnictogen compounds
  • Substituents

  • Rhoeadine-skeleton
  • Hexose monosaccharide
  • Benzazepine
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • Isochromane
  • 2-benzopyran
  • Benzodioxole
  • Azepine
  • Aralkylamine
  • Oxane
  • Benzenoid
  • Monosaccharide
  • Tertiary aliphatic amine
  • Secondary alcohol
  • Tertiary amine
  • Acetal
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Polyol
  • Amine
  • Alcohol
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Primary alcohol
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
  • Molecliar Framework

    Aromatic heteropolycyclic compounds External Descriptors

    Not Available Ontology Status

    Expected but not Quantified Origin

  • Endogenous
  • Food
  • Biofunction

    Not Available Application

  • Nutrient
  • Cellliar locations

  • Cytoplasm
  • Extracellliar
  • Physical Properties State

    Not Available Experimental Properties

    Property Value Reference Melting Point240 – 242 °CNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility3.81 mg/mLALOGPS logP0.37ALOGPS logP0.61ChemAxon logS-2.1ALOGPS pKa (Strongest Acidic)12.21ChemAxon pKa (Strongest Basic)6.16ChemAxon Physiological Charge0ChemAxon Hydrogen Acceptor Count12ChemAxon Hydrogen Donor Count4ChemAxon Polar Surface Area148.77 Å2ChemAxon Rotatable Bond Count3ChemAxon Refractivity126.44 m3·mol-1ChemAxon Polarizability53.89 Å3ChemAxon Number of Rings7ChemAxon Bioavailability0ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, NegativeNot Available

    Biological Properties Cellliar Locations

  • Cytoplasm
  • Extracellliar
  • Biofluid Locations

    Not Available Tissue Location

    Not Available Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB000426 KNApSAcK ID

    Not Available Chemspider ID

    Not Available KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB29361 Metagene Link

    HMDB29361 METLIN ID

    Not Available PubChem Compound

    Not Available PDB ID

    Not Available ChEBI ID

    Not Available

    Product: Lysipressin

    References Synthesis Reference Not Available Material Safety Data Sheet (MSDS) Not Available General References
    1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

    PMID: 17428998

    Alkaloid RC

    Common Name

    Alkaloid RC Description

    Alkaloid RC is an alkaloid RC is an alkaloid from Papaver rhoeas (corn poppy)
    Alkaloid RC belongs to the family of glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (Inferred from compound structure)
    Structure

    MOLSDFPDBSMILESInChI

    Structure for HMDB29361 (Alkaloid RC)

    Synonyms

    Not Available Chemical Formlia

    C26H29NO11 Average Molecliar Weight

    531.5086 Monoisotopic Molecliar Weight

    531.174060775 IUPAC Name

    2-(hydroxymethyl)-6-({13-methyl-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.0²,¹⁰.0⁴,⁸.0¹⁵,²³.0¹⁸,²²]pentacosa-2,4(8),9,15(23),16,18(22)-hexaen-24-yl}oxy)oxane-3,4,5-triol Traditional Name

    2-(hydroxymethyl)-6-({13-methyl-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.0²,¹⁰.0⁴,⁸.0¹⁵,²³.0¹⁸,²²]pentacosa-2,4(8),9,15(23),16,18(22)-hexaen-24-yl}oxy)oxane-3,4,5-triol CAS Registry Number

    17948-36-6 SMILES

    CN1CCC2=CC3=C(OCO3)C=C2C2OC(OC3OC(CO)C(O)C(O)C3O)C3=C(C=CC4=C3OCO4)C12

    InChI Identifier

    InChI=1S/C26H29NO11/c1-27-5-4-11-6-15-16(34-9-33-15)7-13(11)23-19(27)12-2-3-14-24(35-10-32-14)18(12)25(37-23)38-26-22(31)21(30)20(29)17(8-28)36-26/h2-3,6-7,17,19-23,25-26,28-31H,4-5,8-10H2,1H3

    InChI Key

    LOJGKLLTOGPATF-UHFFFAOYSA-N Chemical Taxonomy Description

    This compound belongs to the class of chemical entities known as rhoeadine alkaloids. These are alkaloids with a structure based on rhoeadine. They usually contain a benzazepine system fused with a six-membered hemiacetal or acetal. Kingdom

    Chemical entities Super Class

    Organic compounds Class

    Alkaloids and derivatives Sub Class

    Rhoeadine alkaloids Direct Parent

    Rhoeadine alkaloids Alternative Parents

  • Hexoses
  • Benzazepines
  • O-glycosyl compounds
  • 2-benzopyrans
  • Benzodioxoles
  • Aralkylamines
  • Azepines
  • Benzenoids
  • Oxanes
  • Trialkylamines
  • Secondary alcohols
  • Oxacyclic compounds
  • Acetals
  • Polyols
  • Azacyclic compounds
  • Primary alcohols
  • Hydrocarbon derivatives
  • Organopnictogen compounds
  • Substituents

  • Rhoeadine-skeleton
  • Hexose monosaccharide
  • Benzazepine
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • Isochromane
  • 2-benzopyran
  • Benzodioxole
  • Azepine
  • Aralkylamine
  • Oxane
  • Benzenoid
  • Monosaccharide
  • Tertiary aliphatic amine
  • Secondary alcohol
  • Tertiary amine
  • Acetal
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Polyol
  • Amine
  • Alcohol
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Primary alcohol
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
  • Molecliar Framework

    Aromatic heteropolycyclic compounds External Descriptors

    Not Available Ontology Status

    Expected but not Quantified Origin

  • Endogenous
  • Food
  • Biofunction

    Not Available Application

  • Nutrient
  • Cellliar locations

  • Cytoplasm
  • Extracellliar
  • Physical Properties State

    Not Available Experimental Properties

    Property Value Reference Melting Point240 – 242 °CNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility3.81 mg/mLALOGPS logP0.37ALOGPS logP0.61ChemAxon logS-2.1ALOGPS pKa (Strongest Acidic)12.21ChemAxon pKa (Strongest Basic)6.16ChemAxon Physiological Charge0ChemAxon Hydrogen Acceptor Count12ChemAxon Hydrogen Donor Count4ChemAxon Polar Surface Area148.77 Å2ChemAxon Rotatable Bond Count3ChemAxon Refractivity126.44 m3·mol-1ChemAxon Polarizability53.89 Å3ChemAxon Number of Rings7ChemAxon Bioavailability0ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, NegativeNot Available

    Biological Properties Cellliar Locations

  • Cytoplasm
  • Extracellliar
  • Biofluid Locations

    Not Available Tissue Location

    Not Available Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB000426 KNApSAcK ID

    Not Available Chemspider ID

    Not Available KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB29361 Metagene Link

    HMDB29361 METLIN ID

    Not Available PubChem Compound

    Not Available PDB ID

    Not Available ChEBI ID

    Not Available

    Product: Lysipressin

    References Synthesis Reference Not Available Material Safety Data Sheet (MSDS) Not Available General References
    1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

    PMID: 17428998