Nummularine B

Common Name

Nummliarine B Description

Nummliarine B is found in fruits. Nummliarine B is an alkaloid from the stem bark of Zizyphus jujuba (Chinese date) Nummliarine B belongs to the family of Alpha Amino Acids and Derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon)[1]. (Reference: [1] Amino Acid: http://en.wikipedia.org/wiki/Amino_acid). Structure

MOLSDFPDBSMILESInChI

Structure for HMDB29334 (Nummliarine B)

Synonyms

Value Source Daechuine S27HMDB N-Demethylamphibine HHMDB

Chemical Formlia

C32H41N5O6 Average Molecliar Weight

591.6978 Monoisotopic Molecliar Weight

591.305684069 IUPAC Name

(Z)-N-{1-[(8E,11E,13E)-10-benzyl-8,11-dihydroxy-16-methoxy-2-oxa-6,9,12-triazatricyclo[13.3.1.0³,⁷]nonadeca-1(18),8,11,13,15(19),16-hexaen-6-yl]-3-methyl-1-oxobutan-2-yl}-2-(methylamino)propimidic acid Traditional Name

(Z)-N-{1-[(8E,11E,13E)-10-benzyl-8,11-dihydroxy-16-methoxy-2-oxa-6,9,12-triazatricyclo[13.3.1.0³,⁷]nonadeca-1(18),8,11,13,15(19),16-hexaen-6-yl]-3-methyl-1-oxobutan-2-yl}-2-(methylamino)propimidic acid CAS Registry Number

53947-96-9 SMILES

CNC(C)C(O)=NC(C(C)C)C(=O)N1CCC2OC3=CC=C(OC)C(=C3)C=CN=C(O)/C(CC3=CC=CC=C3)N=C(O)/C12

InChI Identifier

InChI=1S/C32H41N5O6/c1-19(2)27(36-29(38)20(3)33-4)32(41)37-16-14-26-28(37)31(40)35-24(17-21-9-7-6-8-10-21)30(39)34-15-13-22-18-23(43-26)11-12-25(22)42-5/h6-13,15,18-20,24,26-28,33H,14,16-17H2,1-5H3,(H,34,39)(H,35,40)(H,36,38)/b15-13+

InChI Key

ZAVCUVYFGQXSRX-FYWRMAATSA-N Chemical Taxonomy Description

This compound belongs to the class of organic compounds known as cyclic peptides. These are compounds containing a cyclic moiety bearing a peptide backbone. Kingdom

Organic compounds Super Class

Organic acids and derivatives Class

Carboxylic acids and derivatives Sub Class

Amino acids, peptides, and analogues Direct Parent

Cyclic peptides Alternative Parents

  • N-acyl-alpha amino acids and derivatives
  • Alpha amino acid amides
  • N-acylpyrrolidines
  • Anisoles
  • Alkyl aryl ethers
  • Tertiary carboxylic acid amides
  • Cyclic carboximidic acids
  • Tertiary amines
  • Propargyl-type 1,3-dipolar organic compounds
  • Oxacyclic compounds
  • Dialkylamines
  • Azacyclic compounds
  • Hydrocarbon derivatives
  • Carbonyl compounds
  • Substituents

  • Cyclic alpha peptide
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • N-substituted-alpha-amino acid
  • N-acylpyrrolidine
  • Anisole
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Cyclic carboximidic acid
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Tertiary amine
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Secondary amine
  • Ether
  • Secondary aliphatic amine
  • Carboximidic acid derivative
  • Carboximidic acid
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Amine
  • Aromatic heteropolycyclic compound
  • Molecliar Framework

    Aromatic heteropolycyclic compounds External Descriptors

    Not Available Ontology Status

    Expected but not Quantified Origin

  • Endogenous
  • Food
  • Biofunction

    Not Available Application

  • Nutrient
  • Cellliar locations

  • Cytoplasm
  • Extracellliar
  • Physical Properties State

    Not Available Experimental Properties

    Property Value Reference Melting Point230 – 231 °CNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility0.013 mg/mLALOGPS logP2.83ALOGPS logP1.28ChemAxon logS-4.6ALOGPS pKa (Strongest Acidic)4.75ChemAxon pKa (Strongest Basic)8.55ChemAxon Physiological Charge-2ChemAxon Hydrogen Acceptor Count10ChemAxon Hydrogen Donor Count4ChemAxon Polar Surface Area148.57 Å2ChemAxon Rotatable Bond Count8ChemAxon Refractivity162.2 m3·mol-1ChemAxon Polarizability61.95 Å3ChemAxon Number of Rings4ChemAxon Bioavailability1ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, NegativeNot Available

    Biological Properties Cellliar Locations

  • Cytoplasm
  • Extracellliar
  • Biofluid Locations

    Not Available Tissue Location

    Not Available Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB000395 KNApSAcK ID

    C00034471 Chemspider ID

    Not Available KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB29334 Metagene Link

    HMDB29334 METLIN ID

    Not Available PubChem Compound

    51017057 PDB ID

    Not Available ChEBI ID

    Not Available

    Product: BI-7273

    References Synthesis Reference Not Available Material Safety Data Sheet (MSDS) Not Available General References
    1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

    PMID: 10780964

    Nummularine B

    Common Name

    Nummliarine B Description

    Nummliarine B is found in fruits. Nummliarine B is an alkaloid from the stem bark of Zizyphus jujuba (Chinese date) Nummliarine B belongs to the family of Alpha Amino Acids and Derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon)[1]. (Reference: [1] Amino Acid: http://en.wikipedia.org/wiki/Amino_acid). Structure

    MOLSDFPDBSMILESInChI

    Structure for HMDB29334 (Nummliarine B)

    Synonyms

    Value Source Daechuine S27HMDB N-Demethylamphibine HHMDB

    Chemical Formlia

    C32H41N5O6 Average Molecliar Weight

    591.6978 Monoisotopic Molecliar Weight

    591.305684069 IUPAC Name

    (Z)-N-{1-[(8E,11E,13E)-10-benzyl-8,11-dihydroxy-16-methoxy-2-oxa-6,9,12-triazatricyclo[13.3.1.0³,⁷]nonadeca-1(18),8,11,13,15(19),16-hexaen-6-yl]-3-methyl-1-oxobutan-2-yl}-2-(methylamino)propimidic acid Traditional Name

    (Z)-N-{1-[(8E,11E,13E)-10-benzyl-8,11-dihydroxy-16-methoxy-2-oxa-6,9,12-triazatricyclo[13.3.1.0³,⁷]nonadeca-1(18),8,11,13,15(19),16-hexaen-6-yl]-3-methyl-1-oxobutan-2-yl}-2-(methylamino)propimidic acid CAS Registry Number

    53947-96-9 SMILES

    CNC(C)C(O)=NC(C(C)C)C(=O)N1CCC2OC3=CC=C(OC)C(=C3)C=CN=C(O)/C(CC3=CC=CC=C3)N=C(O)/C12

    InChI Identifier

    InChI=1S/C32H41N5O6/c1-19(2)27(36-29(38)20(3)33-4)32(41)37-16-14-26-28(37)31(40)35-24(17-21-9-7-6-8-10-21)30(39)34-15-13-22-18-23(43-26)11-12-25(22)42-5/h6-13,15,18-20,24,26-28,33H,14,16-17H2,1-5H3,(H,34,39)(H,35,40)(H,36,38)/b15-13+

    InChI Key

    ZAVCUVYFGQXSRX-FYWRMAATSA-N Chemical Taxonomy Description

    This compound belongs to the class of organic compounds known as cyclic peptides. These are compounds containing a cyclic moiety bearing a peptide backbone. Kingdom

    Organic compounds Super Class

    Organic acids and derivatives Class

    Carboxylic acids and derivatives Sub Class

    Amino acids, peptides, and analogues Direct Parent

    Cyclic peptides Alternative Parents

  • N-acyl-alpha amino acids and derivatives
  • Alpha amino acid amides
  • N-acylpyrrolidines
  • Anisoles
  • Alkyl aryl ethers
  • Tertiary carboxylic acid amides
  • Cyclic carboximidic acids
  • Tertiary amines
  • Propargyl-type 1,3-dipolar organic compounds
  • Oxacyclic compounds
  • Dialkylamines
  • Azacyclic compounds
  • Hydrocarbon derivatives
  • Carbonyl compounds
  • Substituents

  • Cyclic alpha peptide
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • N-substituted-alpha-amino acid
  • N-acylpyrrolidine
  • Anisole
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Cyclic carboximidic acid
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Tertiary amine
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Secondary amine
  • Ether
  • Secondary aliphatic amine
  • Carboximidic acid derivative
  • Carboximidic acid
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Amine
  • Aromatic heteropolycyclic compound
  • Molecliar Framework

    Aromatic heteropolycyclic compounds External Descriptors

    Not Available Ontology Status

    Expected but not Quantified Origin

  • Endogenous
  • Food
  • Biofunction

    Not Available Application

  • Nutrient
  • Cellliar locations

  • Cytoplasm
  • Extracellliar
  • Physical Properties State

    Not Available Experimental Properties

    Property Value Reference Melting Point230 – 231 °CNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility0.013 mg/mLALOGPS logP2.83ALOGPS logP1.28ChemAxon logS-4.6ALOGPS pKa (Strongest Acidic)4.75ChemAxon pKa (Strongest Basic)8.55ChemAxon Physiological Charge-2ChemAxon Hydrogen Acceptor Count10ChemAxon Hydrogen Donor Count4ChemAxon Polar Surface Area148.57 Å2ChemAxon Rotatable Bond Count8ChemAxon Refractivity162.2 m3·mol-1ChemAxon Polarizability61.95 Å3ChemAxon Number of Rings4ChemAxon Bioavailability1ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, PositiveNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, NegativeNot Available Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, NegativeNot Available

    Biological Properties Cellliar Locations

  • Cytoplasm
  • Extracellliar
  • Biofluid Locations

    Not Available Tissue Location

    Not Available Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB000395 KNApSAcK ID

    C00034471 Chemspider ID

    Not Available KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB29334 Metagene Link

    HMDB29334 METLIN ID

    Not Available PubChem Compound

    51017057 PDB ID

    Not Available ChEBI ID

    Not Available

    Product: BI-7273

    References Synthesis Reference Not Available Material Safety Data Sheet (MSDS) Not Available General References
    1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

    PMID: 10780964