Ophiopogonin C

Common Name

Ophiopogonin C Description

Ophiopogonin C is found in onion-family vegetables. Ophiopogonin C is a constituent of Allium vineale (wild garlic).Ophiopogonin C belongs to the family of Triterpene Glycosides. These are triterpenes in which an isoprene unit is glycosylated. Structure

MOLSDFPDBSMILESInChI

Structure for HMDB29312 (Ophiopogonin C')

Synonyms

Value Source (-)-Progenin IIIHMDB Progenin IIIHMDB Prosapogenin a?HMDB Prosapogenin d'1HMDB Prosapogeninanlg OF diocinHMDB

Chemical Formlia

C39H62O12 Average Molecliar Weight

722.9024 Monoisotopic Molecliar Weight

722.424127448 IUPAC Name

2-{[4,5-dihydroxy-6-(hydroxymethyl)-2-{5,7,9,13-tetramethyl-5-oxaspiro[oxane-2,6-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18-eneoxy}oxan-3-yl]oxy}-6-methyloxane-3,4,5-triol Traditional Name

2-{[4,5-dihydroxy-6-(hydroxymethyl)-2-{5,7,9,13-tetramethyl-5-oxaspiro[oxane-2,6-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18-eneoxy}oxan-3-yl]oxy}-6-methyloxane-3,4,5-triol CAS Registry Number

19057-67-1 SMILES

CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(O)C(O)C2OC2OC(C)C(O)C(O)C2O)OC11CCC(C)CO1

InChI Identifier

InChI=1S/C39H62O12/c1-18-8-13-39(46-17-18)19(2)28-26(51-39)15-25-23-7-6-21-14-22(9-11-37(21,4)24(23)10-12-38(25,28)5)48-36-34(32(44)30(42)27(16-40)49-36)50-35-33(45)31(43)29(41)20(3)47-35/h6,18-20,22-36,40-45H,7-17H2,1-5H3

InChI Key

HDXIQHTUNGFJIC-UHFFFAOYSA-N Chemical Taxonomy Description

This compound belongs to the class of chemical entities known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative. Kingdom

Chemical entities Super Class

Organic compounds Class

Lipids and lipid-like moleclies Sub Class

Steroids and steroid derivatives Direct Parent

Steroidal saponins Alternative Parents

  • Triterpenoids
  • Spirostanes and derivatives
  • Delta-5-steroids
  • O-glycosyl compounds
  • Disaccharides
  • Ketals
  • Oxanes
  • Tetrahydrofurans
  • Secondary alcohols
  • Polyols
  • Oxacyclic compounds
  • Primary alcohols
  • Hydrocarbon derivatives
  • Substituents

  • Steroidal saponin
  • Triterpenoid
  • Spirostane skeleton
  • Delta-5-steroid
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Ketal
  • Oxane
  • Tetrahydrofuran
  • Secondary alcohol
  • Polyol
  • Acetal
  • Oxacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Organic oxygen compound
  • Aliphatic heteropolycyclic compound
  • Molecliar Framework

    Aliphatic heteropolycyclic compounds External Descriptors

    Not Available Ontology Status

    Expected but not Quantified Origin

  • Endogenous
  • Food
  • Biofunction

  • Cell signaling
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane integrity/stability
  • Application

  • Nutrient
  • Stabilizers
  • Surfactants and Emlisifiers
  • Cellliar locations

  • Cytoplasm
  • Extracellliar
  • Membrane
  • Physical Properties State

    Not Available Experimental Properties

    Property Value Reference Melting Point238 – 240 °CNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility0.059 mg/mLALOGPS logP2.41ALOGPS logP2.43ChemAxon logS-4.1ALOGPS pKa (Strongest Acidic)12.1ChemAxon pKa (Strongest Basic)-3ChemAxon Physiological Charge0ChemAxon Hydrogen Acceptor Count12ChemAxon Hydrogen Donor Count6ChemAxon Polar Surface Area176.76 Å2ChemAxon Rotatable Bond Count5ChemAxon Refractivity183.55 m3·mol-1ChemAxon Polarizability80.57 Å3ChemAxon Number of Rings8ChemAxon Bioavailability0ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-066s-6206791600-0a3f6d7a2f4a421dd5a6View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-014i-3244940000-67995ba4397d926e242bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-014i-9204400000-2ba97a90f953d5017b52View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-066s-6206791600-0a3f6d7a2f4a421dd5a6View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-014i-3244940000-67995ba4397d926e242bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-014i-9204400000-2ba97a90f953d5017b52View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-066s-6206791600-0a3f6d7a2f4a421dd5a6View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-014i-3244940000-67995ba4397d926e242bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-014i-9204400000-2ba97a90f953d5017b52View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-096r-9412652700-75d69ad093265aa84232View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-03dj-3913740100-1b1df2a5be178ac9f613View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-03di-9501500000-7287267f9796a0dfa39cView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-096r-9412652700-75d69ad093265aa84232View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-03dj-3913740100-1b1df2a5be178ac9f613View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-03di-9501500000-7287267f9796a0dfa39cView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-096r-9412652700-75d69ad093265aa84232View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-03dj-3913740100-1b1df2a5be178ac9f613View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-03di-9501500000-7287267f9796a0dfa39cView in MoNA

    Biological Properties Cellliar Locations

  • Cytoplasm
  • Extracellliar
  • Membrane
  • Biofluid Locations

    Not Available Tissue Location

    Not Available Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB000370 KNApSAcK ID

    C00030140 Chemspider ID

    3681109 KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB29312 Metagene Link

    HMDB29312 METLIN ID

    Not Available PubChem Compound

    4483248 PDB ID

    Not Available ChEBI ID

    Not Available

    Product: Ceruletide

    References Synthesis Reference Not Available Material Safety Data Sheet (MSDS) Not Available General References
    1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

    PMID: 1512277

    Ophiopogonin C

    Common Name

    Ophiopogonin C Description

    Ophiopogonin C is found in onion-family vegetables. Ophiopogonin C is a constituent of Allium vineale (wild garlic).Ophiopogonin C belongs to the family of Triterpene Glycosides. These are triterpenes in which an isoprene unit is glycosylated. Structure

    MOLSDFPDBSMILESInChI

    Structure for HMDB29312 (Ophiopogonin C')

    Synonyms

    Value Source (-)-Progenin IIIHMDB Progenin IIIHMDB Prosapogenin a?HMDB Prosapogenin d'1HMDB Prosapogeninanlg OF diocinHMDB

    Chemical Formlia

    C39H62O12 Average Molecliar Weight

    722.9024 Monoisotopic Molecliar Weight

    722.424127448 IUPAC Name

    2-{[4,5-dihydroxy-6-(hydroxymethyl)-2-{5,7,9,13-tetramethyl-5-oxaspiro[oxane-2,6-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18-eneoxy}oxan-3-yl]oxy}-6-methyloxane-3,4,5-triol Traditional Name

    2-{[4,5-dihydroxy-6-(hydroxymethyl)-2-{5,7,9,13-tetramethyl-5-oxaspiro[oxane-2,6-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18-eneoxy}oxan-3-yl]oxy}-6-methyloxane-3,4,5-triol CAS Registry Number

    19057-67-1 SMILES

    CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(O)C(O)C2OC2OC(C)C(O)C(O)C2O)OC11CCC(C)CO1

    InChI Identifier

    InChI=1S/C39H62O12/c1-18-8-13-39(46-17-18)19(2)28-26(51-39)15-25-23-7-6-21-14-22(9-11-37(21,4)24(23)10-12-38(25,28)5)48-36-34(32(44)30(42)27(16-40)49-36)50-35-33(45)31(43)29(41)20(3)47-35/h6,18-20,22-36,40-45H,7-17H2,1-5H3

    InChI Key

    HDXIQHTUNGFJIC-UHFFFAOYSA-N Chemical Taxonomy Description

    This compound belongs to the class of chemical entities known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative. Kingdom

    Chemical entities Super Class

    Organic compounds Class

    Lipids and lipid-like moleclies Sub Class

    Steroids and steroid derivatives Direct Parent

    Steroidal saponins Alternative Parents

  • Triterpenoids
  • Spirostanes and derivatives
  • Delta-5-steroids
  • O-glycosyl compounds
  • Disaccharides
  • Ketals
  • Oxanes
  • Tetrahydrofurans
  • Secondary alcohols
  • Polyols
  • Oxacyclic compounds
  • Primary alcohols
  • Hydrocarbon derivatives
  • Substituents

  • Steroidal saponin
  • Triterpenoid
  • Spirostane skeleton
  • Delta-5-steroid
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Ketal
  • Oxane
  • Tetrahydrofuran
  • Secondary alcohol
  • Polyol
  • Acetal
  • Oxacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Organic oxygen compound
  • Aliphatic heteropolycyclic compound
  • Molecliar Framework

    Aliphatic heteropolycyclic compounds External Descriptors

    Not Available Ontology Status

    Expected but not Quantified Origin

  • Endogenous
  • Food
  • Biofunction

  • Cell signaling
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane integrity/stability
  • Application

  • Nutrient
  • Stabilizers
  • Surfactants and Emlisifiers
  • Cellliar locations

  • Cytoplasm
  • Extracellliar
  • Membrane
  • Physical Properties State

    Not Available Experimental Properties

    Property Value Reference Melting Point238 – 240 °CNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility0.059 mg/mLALOGPS logP2.41ALOGPS logP2.43ChemAxon logS-4.1ALOGPS pKa (Strongest Acidic)12.1ChemAxon pKa (Strongest Basic)-3ChemAxon Physiological Charge0ChemAxon Hydrogen Acceptor Count12ChemAxon Hydrogen Donor Count6ChemAxon Polar Surface Area176.76 Å2ChemAxon Rotatable Bond Count5ChemAxon Refractivity183.55 m3·mol-1ChemAxon Polarizability80.57 Å3ChemAxon Number of Rings8ChemAxon Bioavailability0ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-066s-6206791600-0a3f6d7a2f4a421dd5a6View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-014i-3244940000-67995ba4397d926e242bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-014i-9204400000-2ba97a90f953d5017b52View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-066s-6206791600-0a3f6d7a2f4a421dd5a6View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-014i-3244940000-67995ba4397d926e242bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-014i-9204400000-2ba97a90f953d5017b52View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-066s-6206791600-0a3f6d7a2f4a421dd5a6View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-014i-3244940000-67995ba4397d926e242bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-014i-9204400000-2ba97a90f953d5017b52View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-096r-9412652700-75d69ad093265aa84232View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-03dj-3913740100-1b1df2a5be178ac9f613View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-03di-9501500000-7287267f9796a0dfa39cView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-096r-9412652700-75d69ad093265aa84232View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-03dj-3913740100-1b1df2a5be178ac9f613View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-03di-9501500000-7287267f9796a0dfa39cView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-096r-9412652700-75d69ad093265aa84232View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-03dj-3913740100-1b1df2a5be178ac9f613View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-03di-9501500000-7287267f9796a0dfa39cView in MoNA

    Biological Properties Cellliar Locations

  • Cytoplasm
  • Extracellliar
  • Membrane
  • Biofluid Locations

    Not Available Tissue Location

    Not Available Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB000370 KNApSAcK ID

    C00030140 Chemspider ID

    3681109 KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB29312 Metagene Link

    HMDB29312 METLIN ID

    Not Available PubChem Compound

    4483248 PDB ID

    Not Available ChEBI ID

    Not Available

    Product: Ceruletide

    References Synthesis Reference Not Available Material Safety Data Sheet (MSDS) Not Available General References
    1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

    PMID: 1512277